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Segmentation Widget

Hurray! Now you have your features extracted and ready for the main action! 😊
The Segmentation widget is a long widget with several panels, but don't worry we'll go through all of them, from top to bottom!

Inputs and Labels' statistics

Inputs

Inputs

  1. Input Layer: To set which napari layer is your input image layer
  2. Feature Storage: Select your previously extracted features HDF5 file here.
    Note: You need to select the storage file for this particular input image, obviously!
  3. Ground Truth Layer: To select your Labels layer
  4. Add Layer button: To add a new GT layer to napari layers

Labeling Statistics

  1. Analyze button: To get info about number of classes and labels you've added so far.

Note

  • You can have as many Labels layer as you want. But only the selected one will be used for training the RF model.
  • You can also drag & drop your previously saved labels into the napari and select that layer.

Train Model

Inputs